Added web version of geworkbench and a stubby genspace

Author Jonathan Bell <jbell@cs.columbia.edu>
Author date 2012-04-12 20:57:19
Author local date 2012-04-12 16:57:19 -0400
Committer Jonathan Bell <jbell@cs.columbia.edu>
Committer date 2012-04-12 20:57:19
Committer local date 2012-04-12 16:57:19 -0400
Commit 263c936ef54ae6cf8b8790d04b111559a9eccdc9
Tree 88c59a286fe515acd1451f0c95f0a181ff10fb28
Parent a7b90720973053b3d62223e8909aa401817e7658
Added web version of geworkbench and a stubby genspace
Affected files:
genspace-authPlugin/src/org/geworkbench/components/genspace/server/auth/GELoginModule.java
genspace-ejb/ejbModule/org/geworkbench/components/genspace/server/GenericUsageInformation.java
genspace-ejb/ejbModule/org/geworkbench/components/genspace/server/MahoutRecommender.java
genspace-ejb/ejbModule/org/geworkbench/components/genspace/server/mahout/GenspaceMySQLJDBCDataModel.java
genspace-ejb/ejbModule/org/geworkbench/components/genspace/server/mahout/GenspaceUserSimilarity.java
geworkbench-core/.DS_Store
geworkbench-core/.classpath
geworkbench-core/.settings/.svn/entries
geworkbench-core/.svn/all-wcprops
geworkbench-core/.svn/entries
geworkbench-core/bin/.svn/entries
geworkbench-core/bin/matrixreduce/.svn/entries
geworkbench-core/cascripts/.svn/entries
geworkbench-core/classes/.svn/entries
geworkbench-core/classes/cruisecontrol/.svn/entries
geworkbench-core/classes/images/.svn/entries
geworkbench-core/classes/org/.svn/all-wcprops
geworkbench-core/classes/org/.svn/entries
geworkbench-core/classes/org/geworkbench/.svn/all-wcprops
geworkbench-core/classes/org/geworkbench/.svn/entries
geworkbench-core/classes/org/geworkbench/analysis/.svn/all-wcprops
geworkbench-core/classes/org/geworkbench/analysis/.svn/entries
geworkbench-core/classes/org/geworkbench/analysis/.svn/text-base/AbstractAnalysis.java.svn-base
geworkbench-core/classes/org/geworkbench/bison/.svn/entries
geworkbench-core/classes/org/geworkbench/bison/algorithm/.svn/entries
geworkbench-core/classes/org/geworkbench/bison/algorithm/classification/.svn/entries
geworkbench-core/classes/org/geworkbench/bison/annotation/.svn/entries
geworkbench-core/classes/org/geworkbench/bison/datastructure/.svn/entries
geworkbench-core/classes/org/geworkbench/bison/datastructure/biocollections/.svn/entries
geworkbench-core/classes/org/geworkbench/bison/datastructure/biocollections/gsea/.svn/entries
geworkbench-core/classes/org/geworkbench/bison/datastructure/biocollections/medusa/.svn/entries
geworkbench-core/classes/org/geworkbench/bison/datastructure/biocollections/microarrays/.svn/entries
geworkbench-core/classes/org/geworkbench/bison/datastructure/biocollections/pca/.svn/entries
geworkbench-core/classes/org/geworkbench/bison/datastructure/biocollections/sequences/.svn/entries
geworkbench-core/classes/org/geworkbench/bison/datastructure/biocollections/views/.svn/entries
geworkbench-core/classes/org/geworkbench/bison/datastructure/bioobjects/.svn/entries
geworkbench-core/classes/org/geworkbench/bison/datastructure/bioobjects/markers/.svn/entries
geworkbench-core/classes/org/geworkbench/bison/datastructure/bioobjects/markers/annotationparser/.svn/entries
geworkbench-core/classes/org/geworkbench/bison/datastructure/bioobjects/markers/goterms/.svn/entries
geworkbench-core/classes/org/geworkbench/bison/datastructure/bioobjects/microarray/.svn/entries
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geworkbench-core/classes/org/geworkbench/bison/datastructure/bioobjects/structure/.svn/entries
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geworkbench-core/classes/org/geworkbench/bison/model/analysis/.svn/entries
geworkbench-core/classes/org/geworkbench/bison/model/clusters/.svn/entries
geworkbench-core/classes/org/geworkbench/bison/parsers/.svn/entries
geworkbench-core/classes/org/geworkbench/bison/parsers/resources/.svn/entries
geworkbench-core/classes/org/geworkbench/bison/util/.svn/entries
geworkbench-core/classes/org/geworkbench/bison/util/colorcontext/.svn/entries
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geworkbench-core/classes/org/geworkbench/builtin/projects/experimentinformation/help/.svn/entries
geworkbench-core/classes/org/geworkbench/builtin/projects/experimentinformation/help/infoPanel_files/.svn/entries
geworkbench-core/classes/org/geworkbench/builtin/projects/help/.svn/entries
geworkbench-core/classes/org/geworkbench/builtin/projects/help/Manage_workspace_files/.svn/entries
geworkbench-core/classes/org/geworkbench/builtin/projects/help/delete_dataset_files/.svn/entries
geworkbench-core/classes/org/geworkbench/builtin/projects/help/manage_projected_files/.svn/entries
geworkbench-core/classes/org/geworkbench/builtin/projects/help/merge_dataset_files/.svn/entries
geworkbench-core/classes/org/geworkbench/builtin/projects/help/open_dataset_files/.svn/entries
geworkbench-core/classes/org/geworkbench/builtin/projects/help/remote_files/.svn/entries
geworkbench-core/classes/org/geworkbench/builtin/projects/help/rename_dataset_files/.svn/entries
geworkbench-core/classes/org/geworkbench/builtin/projects/history/.svn/entries
geworkbench-core/classes/org/geworkbench/builtin/projects/history/help/.svn/entries
geworkbench-core/classes/org/geworkbench/builtin/projects/history/help/historyPanel_files/.svn/entries
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geworkbench-core/classes/org/geworkbench/builtin/projects/util/.svn/text-base/CaARRAYPanel.java.svn-base
geworkbench-core/classes/org/geworkbench/components/.svn/entries
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geworkbench-core/classes/org/geworkbench/engine/ccm/.svn/entries
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geworkbench-core/classes/org/geworkbench/engine/management/.svn/entries
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geworkbench-core/classes/org/geworkbench/events/.svn/entries
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geworkbench-core/classes/org/geworkbench/parsers/.svn/entries
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geworkbench-core/classes/org/geworkbench/util/annotation/.svn/entries
geworkbench-core/classes/org/geworkbench/util/associationdiscovery/.svn/entries
geworkbench-core/classes/org/geworkbench/util/associationdiscovery/cluster/.svn/entries
geworkbench-core/classes/org/geworkbench/util/associationdiscovery/statistics/.svn/entries
geworkbench-core/classes/org/geworkbench/util/microarrayutils/.svn/entries
geworkbench-core/classes/org/geworkbench/util/network/.svn/entries
geworkbench-core/classes/org/geworkbench/util/pathwaydecoder/.svn/entries
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geworkbench-core/classes/org/geworkbench/util/sequences/.svn/entries
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geworkbench-web/src/org/geworkbenchweb/analysis/hierarchicalclustering/HierarchicalClusteringParamForm.java
geworkbench-web/src/org/geworkbenchweb/analysis/hierarchicalclustering/HierarchicalClusteringWrapper.java
geworkbench-web/src/org/geworkbenchweb/authentication/.svn/all-wcprops
geworkbench-web/src/org/geworkbenchweb/authentication/.svn/entries
geworkbench-web/src/org/geworkbenchweb/authentication/.svn/prop-base/UserAuth.java.svn-base
geworkbench-web/src/org/geworkbenchweb/authentication/.svn/text-base/UserAuth.java.svn-base
geworkbench-web/src/org/geworkbenchweb/authentication/UserAuth.java
geworkbench-web/src/org/geworkbenchweb/components/.svn/entries
geworkbench-web/src/org/geworkbenchweb/components/genspace/.svn/entries
geworkbench-web/src/org/geworkbenchweb/components/genspace/GenSpaceServerFactory.java
geworkbench-web/src/org/geworkbenchweb/components/genspace/RuntimeEnvironmentSettings.java
geworkbench-web/src/org/geworkbenchweb/components/genspace/ui/.svn/entries
geworkbench-web/src/org/geworkbenchweb/components/genspace/ui/.svn/prop-base/GenSpaceWindow.java.svn-base
geworkbench-web/src/org/geworkbenchweb/components/genspace/ui/.svn/text-base/GenSpaceWindow.java.svn-base
geworkbench-web/src/org/geworkbenchweb/components/genspace/ui/GenSpaceComponent.java
geworkbench-web/src/org/geworkbenchweb/components/genspace/ui/GenSpaceWindow.java
geworkbench-web/src/org/geworkbenchweb/components/genspace/ui/component/GenSpaceLogin.java
geworkbench-web/src/org/geworkbenchweb/components/genspace/ui/component/GenSpaceProfile.java
geworkbench-web/src/org/geworkbenchweb/components/genspace/ui/component/GenSpaceTab.java
geworkbench-web/src/org/geworkbenchweb/components/genspace/ui/component/RealTimeWorkflowSuggestion.java
geworkbench-web/src/org/geworkbenchweb/components/genspace/ui/component/WorkflowStatistics.java
geworkbench-web/src/org/geworkbenchweb/components/genspace/ui/component/WorkflowVisualization.java
geworkbench-web/src/org/geworkbenchweb/components/genspace/wrapper/ToolWrapper.java
geworkbench-web/src/org/geworkbenchweb/components/genspace/wrapper/UserWrapper.java
geworkbench-web/src/org/geworkbenchweb/components/genspace/wrapper/WorkflowWrapper.java
geworkbench-web/src/org/geworkbenchweb/dataset/.svn/all-wcprops
geworkbench-web/src/org/geworkbenchweb/dataset/.svn/entries
geworkbench-web/src/org/geworkbenchweb/dataset/.svn/prop-base/DataSetParser.java.svn-base
geworkbench-web/src/org/geworkbenchweb/dataset/.svn/prop-base/DataSetUpload.java.svn-base
geworkbench-web/src/org/geworkbenchweb/dataset/.svn/text-base/DataSetParser.java.svn-base
geworkbench-web/src/org/geworkbenchweb/dataset/.svn/text-base/DataSetUpload.java.svn-base
geworkbench-web/src/org/geworkbenchweb/dataset/DataSetParser.java
geworkbench-web/src/org/geworkbenchweb/dataset/DataSetUpload.java
geworkbench-web/src/org/geworkbenchweb/interactions/.svn/all-wcprops
geworkbench-web/src/org/geworkbenchweb/interactions/.svn/entries
geworkbench-web/src/org/geworkbenchweb/interactions/CNKB/.svn/all-wcprops
geworkbench-web/src/org/geworkbenchweb/interactions/CNKB/.svn/entries
geworkbench-web/src/org/geworkbenchweb/interactions/CNKB/.svn/text-base/CNKBInteractions.java.svn-base
geworkbench-web/src/org/geworkbenchweb/interactions/CNKB/.svn/text-base/CNKBParamForm.java.svn-base
geworkbench-web/src/org/geworkbenchweb/interactions/CNKB/.svn/text-base/Constants.java.svn-base
geworkbench-web/src/org/geworkbenchweb/interactions/CNKB/.svn/text-base/InteractionParticipant.java.svn-base
geworkbench-web/src/org/geworkbenchweb/interactions/CNKB/.svn/text-base/InteractionsConnectionImpl.java.svn-base
geworkbench-web/src/org/geworkbenchweb/interactions/CNKB/.svn/text-base/VersionDescriptor.java.svn-base
geworkbench-web/src/org/geworkbenchweb/interactions/CNKB/CNKBInteractions.java
geworkbench-web/src/org/geworkbenchweb/interactions/CNKB/CNKBParamForm.java
geworkbench-web/src/org/geworkbenchweb/interactions/CNKB/Constants.java
geworkbench-web/src/org/geworkbenchweb/interactions/CNKB/InteractionParticipant.java
geworkbench-web/src/org/geworkbenchweb/interactions/CNKB/InteractionsConnectionImpl.java
geworkbench-web/src/org/geworkbenchweb/interactions/CNKB/VersionDescriptor.java
geworkbench-web/src/org/geworkbenchweb/layout/.svn/all-wcprops
geworkbench-web/src/org/geworkbenchweb/layout/.svn/entries
geworkbench-web/src/org/geworkbenchweb/layout/.svn/prop-base/DataTab.java.svn-base
geworkbench-web/src/org/geworkbenchweb/layout/.svn/prop-base/MainLayout.java.svn-base
geworkbench-web/src/org/geworkbenchweb/layout/.svn/prop-base/VisualPlugin.java.svn-base
geworkbench-web/src/org/geworkbenchweb/layout/.svn/text-base/DataTab.java.svn-base
geworkbench-web/src/org/geworkbenchweb/layout/.svn/text-base/MainLayout.java.svn-base
geworkbench-web/src/org/geworkbenchweb/layout/.svn/text-base/VisualPlugin.java.svn-base
geworkbench-web/src/org/geworkbenchweb/layout/DataTab.java
geworkbench-web/src/org/geworkbenchweb/layout/MainLayout.java
geworkbench-web/src/org/geworkbenchweb/layout/VisualPlugin.java
geworkbench-web/src/org/geworkbenchweb/pojos/.svn/all-wcprops
geworkbench-web/src/org/geworkbenchweb/pojos/.svn/entries
geworkbench-web/src/org/geworkbenchweb/pojos/.svn/prop-base/DataSet.java.svn-base
geworkbench-web/src/org/geworkbenchweb/pojos/.svn/text-base/DataSet.java.svn-base
geworkbench-web/src/org/geworkbenchweb/pojos/.svn/text-base/ResultSet.java.svn-base
geworkbench-web/src/org/geworkbenchweb/pojos/.svn/text-base/SubSet.java.svn-base
geworkbench-web/src/org/geworkbenchweb/pojos/DataSet.java
geworkbench-web/src/org/geworkbenchweb/pojos/ResultSet.java
geworkbench-web/src/org/geworkbenchweb/pojos/SubSet.java
geworkbench-web/src/org/geworkbenchweb/utils/.svn/all-wcprops
geworkbench-web/src/org/geworkbenchweb/utils/.svn/entries
geworkbench-web/src/org/geworkbenchweb/utils/.svn/text-base/SetOperations.java.svn-base
geworkbench-web/src/org/geworkbenchweb/utils/SetOperations.java
geworkbench-web/src/org/geworkbenchweb/visualizations/.svn/all-wcprops
geworkbench-web/src/org/geworkbenchweb/visualizations/.svn/entries
geworkbench-web/src/org/geworkbenchweb/visualizations/.svn/text-base/Cytoscape.java.svn-base
geworkbench-web/src/org/geworkbenchweb/visualizations/.svn/text-base/Dendrogram.java.svn-base
geworkbench-web/src/org/geworkbenchweb/visualizations/.svn/text-base/GeworkbenchWidgetset.gwt.xml.svn-base
geworkbench-web/src/org/geworkbenchweb/visualizations/Cytoscape.java
geworkbench-web/src/org/geworkbenchweb/visualizations/Dendrogram.java
geworkbench-web/src/org/geworkbenchweb/visualizations/GeworkbenchWidgetset.gwt.xml
geworkbench-web/src/org/geworkbenchweb/visualizations/client/.svn/all-wcprops
geworkbench-web/src/org/geworkbenchweb/visualizations/client/.svn/entries
geworkbench-web/src/org/geworkbenchweb/visualizations/client/ui/.svn/all-wcprops
geworkbench-web/src/org/geworkbenchweb/visualizations/client/ui/.svn/entries
geworkbench-web/src/org/geworkbenchweb/visualizations/client/ui/.svn/text-base/TreeData.java.svn-base
geworkbench-web/src/org/geworkbenchweb/visualizations/client/ui/.svn/text-base/VCytoscape.java.svn-base
geworkbench-web/src/org/geworkbenchweb/visualizations/client/ui/.svn/text-base/VDendrogram.java.svn-base
geworkbench-web/src/org/geworkbenchweb/visualizations/client/ui/TreeData.java
geworkbench-web/src/org/geworkbenchweb/visualizations/client/ui/VCytoscape.java
geworkbench-web/src/org/geworkbenchweb/visualizations/client/ui/VDendrogram.java
geworkbench-web/src/org/geworkbenchweb/visualizations/public/.svn/all-wcprops
geworkbench-web/src/org/geworkbenchweb/visualizations/public/.svn/entries
geworkbench-web/src/org/geworkbenchweb/visualizations/public/js/.svn/all-wcprops
geworkbench-web/src/org/geworkbenchweb/visualizations/public/js/.svn/entries
geworkbench-web/src/org/geworkbenchweb/visualizations/public/js/.svn/text-base/jquery.cytoscapeweb.all.js.svn-base
geworkbench-web/src/org/geworkbenchweb/visualizations/public/js/.svn/text-base/jquery.cytoscapeweb.js.svn-base
geworkbench-web/src/org/geworkbenchweb/visualizations/public/js/extensions/.svn/all-wcprops
geworkbench-web/src/org/geworkbenchweb/visualizations/public/js/extensions/.svn/entries
geworkbench-web/src/org/geworkbenchweb/visualizations/public/js/extensions/.svn/text-base/jquery.cytoscapeweb.layout.arbor.js.svn-base
geworkbench-web/src/org/geworkbenchweb/visualizations/public/js/extensions/.svn/text-base/jquery.cytoscapeweb.layout.grid.js.svn-base
geworkbench-web/src/org/geworkbenchweb/visualizations/public/js/extensions/.svn/text-base/jquery.cytoscapeweb.layout.null.js.svn-base
geworkbench-web/src/org/geworkbenchweb/visualizations/public/js/extensions/.svn/text-base/jquery.cytoscapeweb.layout.preset.js.svn-base
geworkbench-web/src/org/geworkbenchweb/visualizations/public/js/extensions/.svn/text-base/jquery.cytoscapeweb.layout.random.js.svn-base
geworkbench-web/src/org/geworkbenchweb/visualizations/public/js/extensions/.svn/text-base/jquery.cytoscapeweb.layout.springy.js.svn-base
geworkbench-web/src/org/geworkbenchweb/visualizations/public/js/extensions/.svn/text-base/jquery.cytoscapeweb.renderer.null.js.svn-base
geworkbench-web/src/org/geworkbenchweb/visualizations/public/js/extensions/.svn/text-base/jquery.cytoscapeweb.renderer.svg.js.svn-base
geworkbench-web/src/org/geworkbenchweb/visualizations/public/js/extensions/jquery.cytoscapeweb.layout.arbor.js
geworkbench-web/src/org/geworkbenchweb/visualizations/public/js/extensions/jquery.cytoscapeweb.layout.grid.js
geworkbench-web/src/org/geworkbenchweb/visualizations/public/js/extensions/jquery.cytoscapeweb.layout.null.js
geworkbench-web/src/org/geworkbenchweb/visualizations/public/js/extensions/jquery.cytoscapeweb.layout.preset.js
geworkbench-web/src/org/geworkbenchweb/visualizations/public/js/extensions/jquery.cytoscapeweb.layout.random.js
geworkbench-web/src/org/geworkbenchweb/visualizations/public/js/extensions/jquery.cytoscapeweb.layout.springy.js
geworkbench-web/src/org/geworkbenchweb/visualizations/public/js/extensions/jquery.cytoscapeweb.renderer.null.js
geworkbench-web/src/org/geworkbenchweb/visualizations/public/js/extensions/jquery.cytoscapeweb.renderer.svg.js
geworkbench-web/src/org/geworkbenchweb/visualizations/public/js/jquery.cytoscapeweb.all.js
geworkbench-web/src/org/geworkbenchweb/visualizations/public/js/jquery.cytoscapeweb.js
geworkbench-web/src/org/geworkbenchweb/visualizations/public/js/lib/.svn/all-wcprops
geworkbench-web/src/org/geworkbenchweb/visualizations/public/js/lib/.svn/entries
geworkbench-web/src/org/geworkbenchweb/visualizations/public/js/lib/.svn/text-base/2D.js.svn-base
geworkbench-web/src/org/geworkbenchweb/visualizations/public/js/lib/.svn/text-base/arbor.js.svn-base
geworkbench-web/src/org/geworkbenchweb/visualizations/public/js/lib/.svn/text-base/jquery-1.3.2.min.js.svn-base
geworkbench-web/src/org/geworkbenchweb/visualizations/public/js/lib/.svn/text-base/jquery-1.7.2.js.svn-base
geworkbench-web/src/org/geworkbenchweb/visualizations/public/js/lib/.svn/text-base/jquery.color.js.svn-base
geworkbench-web/src/org/geworkbenchweb/visualizations/public/js/lib/.svn/text-base/jquery.mousewheel.js.svn-base
geworkbench-web/src/org/geworkbenchweb/visualizations/public/js/lib/.svn/text-base/jquery.svg.js.svn-base
geworkbench-web/src/org/geworkbenchweb/visualizations/public/js/lib/2D.js
geworkbench-web/src/org/geworkbenchweb/visualizations/public/js/lib/arbor.js
geworkbench-web/src/org/geworkbenchweb/visualizations/public/js/lib/jquery-1.3.2.min.js
geworkbench-web/src/org/geworkbenchweb/visualizations/public/js/lib/jquery-1.7.2.js
geworkbench-web/src/org/geworkbenchweb/visualizations/public/js/lib/jquery.color.js
geworkbench-web/src/org/geworkbenchweb/visualizations/public/js/lib/jquery.mousewheel.js
geworkbench-web/src/org/geworkbenchweb/visualizations/public/js/lib/jquery.svg.js
geworkbench-web/src/org/geworkbenchweb/visualizations/public/js/plugins/.svn/all-wcprops
geworkbench-web/src/org/geworkbenchweb/visualizations/public/js/plugins/.svn/entries
geworkbench-web/src/org/geworkbenchweb/visualizations/public/js/plugins/.svn/text-base/jquery.cytoscapeweb-edgehandles.js.svn-base
geworkbench-web/src/org/geworkbenchweb/visualizations/public/js/plugins/.svn/text-base/jquery.cytoscapeweb-panzoom.css.svn-base
geworkbench-web/src/org/geworkbenchweb/visualizations/public/js/plugins/.svn/text-base/jquery.cytoscapeweb-panzoom.js.svn-base
geworkbench-web/src/org/geworkbenchweb/visualizations/public/js/plugins/jquery.cytoscapeweb-edgehandles.js
geworkbench-web/src/org/geworkbenchweb/visualizations/public/js/plugins/jquery.cytoscapeweb-panzoom.css
geworkbench-web/src/org/geworkbenchweb/visualizations/public/js/plugins/jquery.cytoscapeweb-panzoom.js