updated geworkbench to 2.3.0 and added notes feature to server

Author Jonathan Bell <jbell@cs.columbia.edu>
Author date 2012-03-05 20:52:11
Author local date 2012-03-05 15:52:11 -0500
Committer Jonathan Bell <jbell@cs.columbia.edu>
Committer date 2012-03-05 20:52:11
Committer local date 2012-03-05 15:52:11 -0500
Commit a7b90720973053b3d62223e8909aa401817e7658
Tree 795d56a22f2990bb372272adbbde65008dd16cfd
Parent fe218166e04bedeaccbf6a0b81bbdcdaa74717e4
updated geworkbench to 2.3.0 and added notes feature to server
Affected files:
create.sql
genspace-common/src/org/geworkbench/components/genspace/entity/AnalysisEvent.java
genspace-common/src/org/geworkbench/components/genspace/server/stubs/AnalysisEvent.java
genspace-common/src/org/geworkbench/components/genspace/server/stubs/GetMyNotes.java
genspace-common/src/org/geworkbench/components/genspace/server/stubs/GetMyNotesResponse.java
genspace-common/src/org/geworkbench/components/genspace/server/stubs/SaveNote.java
genspace-common/src/org/geworkbench/components/genspace/server/stubs/SaveNoteResponse.java
genspace-common/src/org/geworkbench/components/genspace/server/stubs/UsageInformation.java
genspace-common/src/org/geworkbench/components/genspace/server/stubs/UserFacade.java
genspace-common/src/org/geworkbench/components/genspace/server/stubs/WorkflowRepository.java
genspace-ejb/ejbModule/org/geworkbench/components/genspace/server/UsageInformation.java
genspace-site/.idea/workspace.xml
genspace-site/apps/public/config/settings.yml
genspace-site/apps/public/modules/workflow/actions/actions.class.php
genspace-site/apps/public/modules/workflow/templates/_login.php
genspace-site/apps/public/modules/workflow/templates/indexSuccess.php
genspace-site/cache/project_autoload.cache
genspace-site/cache/public/prod/config/config_autoload.yml.php
genspace-site/cache/public/prod/config/config_config_handlers.yml.php
genspace-site/cache/public/prod/config/config_databases.yml.php
genspace-site/cache/public/prod/config/config_factories.yml.php
genspace-site/cache/public/prod/config/config_routing.yml.php
genspace-site/cache/public/prod/config/config_settings.yml.php
genspace-site/cache/public/prod/config/modules_static_config_filters.yml.php
genspace-site/cache/public/prod/config/modules_static_config_module.yml.php
genspace-site/cache/public/prod/config/modules_static_config_security.yml.php
genspace-site/cache/public/prod/config/modules_static_config_view.yml.php
genspace-site/cache/public/prod/config/modules_tool_config_filters.yml.php
genspace-site/cache/public/prod/config/modules_tool_config_module.yml.php
genspace-site/cache/public/prod/config/modules_tool_config_security.yml.php
genspace-site/cache/public/prod/config/modules_tool_config_view.yml.php
genspace-site/config/ProjectConfiguration.class.php
genspace-site/config/generated-schema.xml
genspace-site/config/schema.yml
genspace-site/data/sql/lib.model.schema.sql
genspace-site/lib/filter/base/BaseToolsFormFilter.class.php
genspace-site/lib/form/base/BaseAccessForm.class.php
genspace-site/lib/form/base/BaseAnalysiseventForm.class.php
genspace-site/lib/form/base/BaseAnalysiseventparameterForm.class.php
genspace-site/lib/form/base/BaseAnnotationForm.class.php
genspace-site/lib/form/base/BaseFriendForm.class.php
genspace-site/lib/form/base/BaseHistoryForm.class.php
genspace-site/lib/form/base/BaseIncomingworkflowForm.class.php
genspace-site/lib/form/base/BaseNetworkForm.class.php
genspace-site/lib/form/base/BaseRegistrationForm.class.php
genspace-site/lib/form/base/BaseSettingForm.class.php
genspace-site/lib/form/base/BaseShortNewsForm.class.php
genspace-site/lib/form/base/BaseTigNodesForm.class.php
genspace-site/lib/form/base/BaseTigPairsForm.class.php
genspace-site/lib/form/base/BaseTigUsersForm.class.php
genspace-site/lib/form/base/BaseToolCommentsForm.class.php
genspace-site/lib/form/base/BaseToolForm.class.php
genspace-site/lib/form/base/BaseToolRatingsForm.class.php
genspace-site/lib/form/base/BaseToolsForm.class.php
genspace-site/lib/form/base/BaseTransactionForm.class.php
genspace-site/lib/form/base/BaseUserNetworkForm.class.php
genspace-site/lib/form/base/BaseUserworkflowForm.class.php
genspace-site/lib/form/base/BaseWorkflowCommentsForm.class.php
genspace-site/lib/form/base/BaseWorkflowForm.class.php
genspace-site/lib/form/base/BaseWorkflowRatingsForm.class.php
genspace-site/lib/form/base/BaseWorkflowfolderForm.class.php
genspace-site/lib/form/base/BaseWorkflowtoolForm.class.php
genspace-site/lib/form/base/BaseWorkspaceForm.class.php
genspace-site/lib/form/base/BaseWorkspaceRootForm.class.php
genspace-site/lib/form/base/BaseWorkspaceUserForm.class.php
genspace-site/lib/form/base/BaseXmppStanzaForm.class.php
genspace-site/lib/model/ToolsPeer.php
genspace-site/lib/model/map/ToolsTableMap.php
genspace-site/lib/model/om/BaseTools.php
genspace-site/lib/model/om/BaseToolsPeer.php
genspace-site/lib/model/om/BaseToolsQuery.php
genspace-site/log/public_dev.log
genspace-site/plugins/sfGuardPlugin/lib/form/base/BasesfGuardGroupForm.class.php
genspace-site/plugins/sfGuardPlugin/lib/form/base/BasesfGuardGroupPermissionForm.class.php
genspace-site/plugins/sfGuardPlugin/lib/form/base/BasesfGuardPermissionForm.class.php
genspace-site/plugins/sfGuardPlugin/lib/form/base/BasesfGuardRememberKeyForm.class.php
genspace-site/plugins/sfGuardPlugin/lib/form/base/BasesfGuardUserForm.class.php
genspace-site/plugins/sfGuardPlugin/lib/form/base/BasesfGuardUserGroupForm.class.php
genspace-site/plugins/sfGuardPlugin/lib/form/base/BasesfGuardUserPermissionForm.class.php
geworkbench-core/.classpath
geworkbench-core/.settings/.svn/entries
geworkbench-core/.svn/all-wcprops
geworkbench-core/.svn/entries
geworkbench-core/.svn/prop-base/ReleaseNotes_2.3.0.txt.svn-base
geworkbench-core/.svn/text-base/.classpath.svn-base
geworkbench-core/.svn/text-base/ReleaseNotes_2.3.0.txt.svn-base
geworkbench-core/.svn/text-base/build.xml.svn-base
geworkbench-core/.svn/tmp/.classpath.tmp
geworkbench-core/.svn/tmp/build.xml.tmp
geworkbench-core/ReleaseNotes_2.3.0.txt
geworkbench-core/bin/.svn/entries
geworkbench-core/bin/matrixreduce/.svn/entries
geworkbench-core/build.xml
geworkbench-core/cascripts/.svn/entries
geworkbench-core/classes/.svn/all-wcprops
geworkbench-core/classes/.svn/entries
geworkbench-core/classes/.svn/text-base/application.properties.svn-base
geworkbench-core/classes/.svn/tmp/application.properties.tmp
geworkbench-core/classes/application.properties
geworkbench-core/classes/cruisecontrol/.svn/entries
geworkbench-core/classes/images/.svn/entries
geworkbench-core/classes/org/.svn/all-wcprops
geworkbench-core/classes/org/.svn/entries
geworkbench-core/classes/org/geworkbench/.svn/all-wcprops
geworkbench-core/classes/org/geworkbench/.svn/entries
geworkbench-core/classes/org/geworkbench/analysis/.svn/entries
geworkbench-core/classes/org/geworkbench/bison/.svn/all-wcprops
geworkbench-core/classes/org/geworkbench/bison/.svn/entries
geworkbench-core/classes/org/geworkbench/bison/algorithm/.svn/entries
geworkbench-core/classes/org/geworkbench/bison/algorithm/classification/.svn/entries
geworkbench-core/classes/org/geworkbench/bison/annotation/.svn/entries
geworkbench-core/classes/org/geworkbench/bison/datastructure/.svn/all-wcprops
geworkbench-core/classes/org/geworkbench/bison/datastructure/.svn/entries
geworkbench-core/classes/org/geworkbench/bison/datastructure/biocollections/.svn/entries
geworkbench-core/classes/org/geworkbench/bison/datastructure/biocollections/gsea/.svn/entries
geworkbench-core/classes/org/geworkbench/bison/datastructure/biocollections/medusa/.svn/entries
geworkbench-core/classes/org/geworkbench/bison/datastructure/biocollections/microarrays/.svn/entries
geworkbench-core/classes/org/geworkbench/bison/datastructure/biocollections/pca/.svn/entries
geworkbench-core/classes/org/geworkbench/bison/datastructure/biocollections/sequences/.svn/entries
geworkbench-core/classes/org/geworkbench/bison/datastructure/biocollections/views/.svn/entries
geworkbench-core/classes/org/geworkbench/bison/datastructure/bioobjects/.svn/all-wcprops
geworkbench-core/classes/org/geworkbench/bison/datastructure/bioobjects/.svn/entries
geworkbench-core/classes/org/geworkbench/bison/datastructure/bioobjects/markers/.svn/entries
geworkbench-core/classes/org/geworkbench/bison/datastructure/bioobjects/markers/annotationparser/.svn/entries
geworkbench-core/classes/org/geworkbench/bison/datastructure/bioobjects/markers/goterms/.svn/entries
geworkbench-core/classes/org/geworkbench/bison/datastructure/bioobjects/microarray/.svn/all-wcprops
geworkbench-core/classes/org/geworkbench/bison/datastructure/bioobjects/microarray/.svn/entries
geworkbench-core/classes/org/geworkbench/bison/datastructure/bioobjects/microarray/.svn/text-base/CSSignificanceResultSet.java.svn-base
geworkbench-core/classes/org/geworkbench/bison/datastructure/bioobjects/microarray/.svn/text-base/CSTTestResultSet.java.svn-base
geworkbench-core/classes/org/geworkbench/bison/datastructure/bioobjects/microarray/.svn/text-base/DSSignificanceResultSet.java.svn-base
geworkbench-core/classes/org/geworkbench/bison/datastructure/bioobjects/sequence/.svn/entries
geworkbench-core/classes/org/geworkbench/bison/datastructure/bioobjects/structure/.svn/entries
geworkbench-core/classes/org/geworkbench/bison/datastructure/complex/.svn/all-wcprops
geworkbench-core/classes/org/geworkbench/bison/datastructure/complex/.svn/entries
geworkbench-core/classes/org/geworkbench/bison/datastructure/complex/panels/.svn/entries
geworkbench-core/classes/org/geworkbench/bison/datastructure/complex/pattern/.svn/all-wcprops
geworkbench-core/classes/org/geworkbench/bison/datastructure/complex/pattern/.svn/entries
geworkbench-core/classes/org/geworkbench/bison/datastructure/complex/pattern/.svn/prop-base/CSMatchedPattern.java.svn-base
geworkbench-core/classes/org/geworkbench/bison/datastructure/complex/pattern/.svn/prop-base/DSMatchedPattern.java.svn-base
geworkbench-core/classes/org/geworkbench/bison/datastructure/complex/pattern/.svn/text-base/CSMatchedPattern.java.svn-base
geworkbench-core/classes/org/geworkbench/bison/datastructure/complex/pattern/.svn/text-base/DSMatchedPattern.java.svn-base
geworkbench-core/classes/org/geworkbench/bison/datastructure/complex/pattern/matrix/.svn/entries
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geworkbench-core/classes/org/geworkbench/bison/datastructure/complex/pattern/sequence/.svn/entries
geworkbench-core/classes/org/geworkbench/bison/datastructure/properties/.svn/entries
geworkbench-core/classes/org/geworkbench/bison/model/.svn/entries
geworkbench-core/classes/org/geworkbench/bison/model/analysis/.svn/entries
geworkbench-core/classes/org/geworkbench/bison/model/clusters/.svn/entries
geworkbench-core/classes/org/geworkbench/bison/parsers/.svn/entries
geworkbench-core/classes/org/geworkbench/bison/parsers/resources/.svn/entries
geworkbench-core/classes/org/geworkbench/bison/util/.svn/entries
geworkbench-core/classes/org/geworkbench/bison/util/colorcontext/.svn/entries
geworkbench-core/classes/org/geworkbench/builtin/.svn/all-wcprops
geworkbench-core/classes/org/geworkbench/builtin/.svn/entries
geworkbench-core/classes/org/geworkbench/builtin/projects/.svn/all-wcprops
geworkbench-core/classes/org/geworkbench/builtin/projects/.svn/entries
geworkbench-core/classes/org/geworkbench/builtin/projects/.svn/text-base/FileOpenHandler.java.svn-base
geworkbench-core/classes/org/geworkbench/builtin/projects/comments/.svn/entries
geworkbench-core/classes/org/geworkbench/builtin/projects/comments/help/.svn/entries
geworkbench-core/classes/org/geworkbench/builtin/projects/experimentinformation/.svn/entries
geworkbench-core/classes/org/geworkbench/builtin/projects/experimentinformation/help/.svn/entries
geworkbench-core/classes/org/geworkbench/builtin/projects/experimentinformation/help/infoPanel_files/.svn/entries
geworkbench-core/classes/org/geworkbench/builtin/projects/help/.svn/entries
geworkbench-core/classes/org/geworkbench/builtin/projects/help/Manage_workspace_files/.svn/entries
geworkbench-core/classes/org/geworkbench/builtin/projects/help/delete_dataset_files/.svn/entries
geworkbench-core/classes/org/geworkbench/builtin/projects/help/manage_projected_files/.svn/entries
geworkbench-core/classes/org/geworkbench/builtin/projects/help/merge_dataset_files/.svn/entries
geworkbench-core/classes/org/geworkbench/builtin/projects/help/open_dataset_files/.svn/entries
geworkbench-core/classes/org/geworkbench/builtin/projects/help/remote_files/.svn/entries
geworkbench-core/classes/org/geworkbench/builtin/projects/help/rename_dataset_files/.svn/entries
geworkbench-core/classes/org/geworkbench/builtin/projects/history/.svn/entries
geworkbench-core/classes/org/geworkbench/builtin/projects/history/help/.svn/entries
geworkbench-core/classes/org/geworkbench/builtin/projects/history/help/historyPanel_files/.svn/entries
geworkbench-core/classes/org/geworkbench/builtin/projects/history/help/images/.svn/entries
geworkbench-core/classes/org/geworkbench/builtin/projects/remoteresources/.svn/all-wcprops
geworkbench-core/classes/org/geworkbench/builtin/projects/remoteresources/.svn/entries
geworkbench-core/classes/org/geworkbench/builtin/projects/remoteresources/carraydata/.svn/all-wcprops
geworkbench-core/classes/org/geworkbench/builtin/projects/remoteresources/carraydata/.svn/entries
geworkbench-core/classes/org/geworkbench/builtin/projects/remoteresources/carraydata/.svn/prop-base/CaArray2Experiment.java.svn-base
geworkbench-core/classes/org/geworkbench/builtin/projects/remoteresources/carraydata/.svn/text-base/CaArray2Experiment.java.svn-base
geworkbench-core/classes/org/geworkbench/builtin/projects/target/.svn/entries
geworkbench-core/classes/org/geworkbench/builtin/projects/util/.svn/all-wcprops
geworkbench-core/classes/org/geworkbench/builtin/projects/util/.svn/entries
geworkbench-core/classes/org/geworkbench/builtin/projects/util/.svn/text-base/CaARRAYPanel.java.svn-base
geworkbench-core/classes/org/geworkbench/components/.svn/entries
geworkbench-core/classes/org/geworkbench/engine/.svn/all-wcprops
geworkbench-core/classes/org/geworkbench/engine/.svn/entries
geworkbench-core/classes/org/geworkbench/engine/ccm/.svn/all-wcprops
geworkbench-core/classes/org/geworkbench/engine/ccm/.svn/entries
geworkbench-core/classes/org/geworkbench/engine/ccm/.svn/prop-base/ComponentConfigurationManagerWindow2.java.svn-base
geworkbench-core/classes/org/geworkbench/engine/ccm/.svn/text-base/CCMTableModel.java.svn-base
geworkbench-core/classes/org/geworkbench/engine/ccm/.svn/text-base/ComponentConfigurationManager.java.svn-base
geworkbench-core/classes/org/geworkbench/engine/ccm/.svn/text-base/ComponentConfigurationManagerWindow.java.svn-base
geworkbench-core/classes/org/geworkbench/engine/ccm/.svn/text-base/ComponentConfigurationManagerWindow2.java.svn-base
geworkbench-core/classes/org/geworkbench/engine/ccm/.svn/text-base/PluginComponent.java.svn-base
geworkbench-core/classes/org/geworkbench/engine/config/.svn/entries
geworkbench-core/classes/org/geworkbench/engine/config/events/.svn/entries
geworkbench-core/classes/org/geworkbench/engine/config/rules/.svn/entries
geworkbench-core/classes/org/geworkbench/engine/help/.svn/entries
geworkbench-core/classes/org/geworkbench/engine/help/ccm_files/.svn/entries
geworkbench-core/classes/org/geworkbench/engine/help/images/.svn/entries
geworkbench-core/classes/org/geworkbench/engine/management/.svn/entries
geworkbench-core/classes/org/geworkbench/engine/preferences/.svn/entries
geworkbench-core/classes/org/geworkbench/engine/properties/.svn/entries
geworkbench-core/classes/org/geworkbench/engine/skin/.svn/entries
geworkbench-core/classes/org/geworkbench/events/.svn/entries
geworkbench-core/classes/org/geworkbench/events/listeners/.svn/entries
geworkbench-core/classes/org/geworkbench/parsers/.svn/all-wcprops
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