Last commit for .gitignore: ad3b78198ee23c24ac11cf26f09a80d2387e14ec

Revert "First draft of a parser that loads EMBL MSA data files of the .dat and .aln format into MySQL"

Jonathan Bell [2012-01-10 19:17:00]
Revert "First draft of a parser that loads EMBL MSA data files of the .dat and .aln format into MySQL"

This reverts commit 5d121dc3256ab419151022b6f84598de5afd242e.

Conflicts:

	EmblAlignParser/.classpath
	EmblAlignParser/src/META-INF/persistence.xml
	EmblAlignParser/src/coms6901/fall2011/ReadEMBL.java
	EmblAlignParser/src/org/geworkbench/components/genspace/entity/msa/Alignment.java
	genspace-common/.classpath
	genspace-common/makeStubs.sh
	genspace-common/src/org/geworkbench/components/genspace/entity/msa/Alignment.java
	genspace-common/src/org/geworkbench/components/genspace/entity/msa/Reference.java
	genspace-common/src/org/geworkbench/components/genspace/server/stubs/Alignment.java
	genspace-common/src/org/geworkbench/components/genspace/server/stubs/FriendFacadeService.java
	genspace-common/src/org/geworkbench/components/genspace/server/stubs/LazyCycleBreaker.java
	genspace-common/src/org/geworkbench/components/genspace/server/stubs/NetworkFacadeService.java
	genspace-common/src/org/geworkbench/components/genspace/server/stubs/ObjectFactory.java
	genspace-common/src/org/geworkbench/components/genspace/server/stubs/PublicFacadeService.java
	genspace-common/src/org/geworkbench/components/genspace/server/stubs/Reference.java
	genspace-common/src/org/geworkbench/components/genspace/server/stubs/ToolUsageInformation.java
	genspace-common/src/org/geworkbench/components/genspace/server/stubs/ToolUsageInformationService.java
	genspace-common/src/org/geworkbench/components/genspace/server/stubs/UsageInformationService.java
	genspace-common/src/org/geworkbench/components/genspace/server/stubs/UserFacade.java
	genspace-common/src/org/geworkbench/components/genspace/server/stubs/UserFacadeService.java
	genspace-common/src/org/geworkbench/components/genspace/server/stubs/WorkflowRepositoryService.java
	genspace-common/src/org/geworkbench/components/genspace/server/stubs/package-info.java
	genspace-ejb/.classpath
	genspace-ejb/build/classes/META-INF/persistence.xml
	genspace-ejb/build/classes/META-INF/sun-ejb-jar.xml
	genspace-ejb/ejbModule/META-INF/persistence.xml
	genspace-ejb/ejbModule/META-INF/sun-ejb-jar.xml
*.class
.DS_Store